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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44267796_44268906_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44267796 - 44268906
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCAA
5'SS Class:
major
3'SS Sequence:
ATATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTCTCTTTAAAC
Flanking Amino Acid:
ALEAPSIQIQELCLNIIPTF
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.8
39.4
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
86
0.81
0.8
80.5
36.2
Minor 5ss
35.5
-1.6
3.3
46.5
48.8
Minor BPS
75.3
0.77
1.3
79.33
36

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540