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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44269030_44269161_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44269030 - 44269161
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGCTTCTGAACT
Flanking Amino Acid:
QQEPIQASNMILLIFLQKMD
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.7
0.76
0.6
80.4
25
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
63.8
0.51
1.5
74.21
42.2

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026014
44260941 - 44291686
30746