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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44273215_44274743_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44273215 - 44274743
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
VRPDADQMTKIPFFDDVGAV
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.7
33.5
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
79.8
0.67
0.8
77.7
29.9
Minor 5ss
35.9
-1.6
2.6
42.5
44.2
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540