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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44274861_44275642_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44274861 - 44275642
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTGCTTTAATT
Flanking Amino Acid:
YKSFSRQLDQLSRLSSSNLQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.2
0.57
1
69.7
40.8
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
74.2
0.84
1.3
84.22
37.1

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540