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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44279787_44282432_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44279787 - 44282432
Intron Length:
2646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGTTGCTTATTT
Flanking Amino Acid:
MLNKEVAVFVFDKK
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
81.9
26.3
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77.7
0.62
0.9
70
40.5
Minor 5ss
44.4
-0.6
2.7
57.6
47.1
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013235
44260941 - 44282480
21540