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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44294386_44295258_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44294386 - 44295258
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
IVDSIQNLPEEMQPHFFKNI
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
ACTR6
Ensembl Gene ID:
ENSAPLG00000012204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012743
44293137 - 44310637
17501