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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44296817_44297000_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44296817 - 44297000
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGATA
5'SS Class:
major
3'SS Sequence:
TCTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
QDFYKDMEIAKLKGEENTVM
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
74.2
35.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.3
0.84
0.7
85.3
27.7
Minor 5ss
43.6
-0.7
3.1
56.9
42.1
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
ACTR6
Ensembl Gene ID:
ENSAPLG00000012204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012743
44293137 - 44310637
17501