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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44297868_44297959_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44297868 - 44297959
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGT
Flanking Amino Acid:
RSKKKKEAIIRINVGGKLLT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
85.7
27.7
Minor 5ss
38.3
-1.3
3.5
56.7
47.6
Minor BPS
61.2
0.43
1.9
82.72
39.3

Associated Gene:

Gene:
ACTR6
Ensembl Gene ID:
ENSAPLG00000012204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012743
44293137 - 44310637
17501