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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44298096_44298821_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44298096 - 44298821
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCGAATTAAAT
Flanking Amino Acid:
YQFQAVLRVNAGALSAHRYF
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
83.5
29.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
34.3
-1.8
2.8
43.1
43.9
Minor BPS
49.1
0.01
2
71.49
44.8

Associated Gene:

Gene:
ACTR6
Ensembl Gene ID:
ENSAPLG00000012204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012743
44293137 - 44310637
17501