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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44327799_44328838_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44327799 - 44328838
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTGTCTTAGAGT
Flanking Amino Acid:
KVFCNKASIRIPWTKLKTHP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
87.3
0.84
0.7
82.1
28.1
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
51.7
0.13
2
74.14
43.6

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050