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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44332018_44333502_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44332018 - 44333502
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCAAT
5'SS Class:
major
3'SS Sequence:
TTTTACCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATA
Flanking Amino Acid:
PSPIATASGQSEYGFAEKVV
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.3
77.9
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.4
0.73
0.8
74.6
36
Minor 5ss
36.5
-1.5
2.9
48.8
47
Minor BPS
61.4
0.35
1.8
73.64
38.1

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050