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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44336808_44338108_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44336808 - 44338108
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TAAATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTCTACCAATT
Flanking Amino Acid:
RKSLASETAQSSAPAPSSQQ
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
74.7
0.56
1
70.6
44
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
45.9
-0.2
2
71.66
39

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050