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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44338290_44339666_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44338290 - 44339666
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
ATTGCTTTATTT
Flanking Amino Acid:
ICDDIHSKEKDSNRRVTGGA
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
61.2
0.43
1.7
77.64
39.7

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050