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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44345448_44347262_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44345448 - 44347262
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTGTCTTTTACA
Flanking Amino Acid:
VRLADFNIYQVSTADQCRSS
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.9
0.79
0.8
79.4
32.6
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
63.9
0.43
1.7
70.62
41.9

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050