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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44347405_44348502_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44347405 - 44348502
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGATGA
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGATTTTATTT
Flanking Amino Acid:
YYYPDGKDFPIPCPNLYGQL
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.2
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
39.2
-1.2
3.1
49
42.4
Minor BPS
50.5
0.09
1.6
65.97
39.6

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050