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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44352342_44353739_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
44352342 - 44353739
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
GCATGTATGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGC
Flanking Amino Acid:
GSDSQSFLEKGITATNYQSP
Intron Amino Acid Position:
1137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
49.4
-0
1.2
49.2
42.8
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
51.6
0.03
2
70.59
40.9

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050