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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44358904_44361068_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44358904 - 44361068
Intron Length:
2165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TATATTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATCTTTGAAT
Flanking Amino Acid:
KVSNAKINLKDDSPRENLKV
Intron Amino Acid Position:
1319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.8
78.2
35.8
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
65.7
0.57
1.4
76.65
40.1

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050