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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44361178_44363688_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44361178 - 44363688
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTACTCTCAAGT
Flanking Amino Acid:
RNDDGSFFIRDNQRANDVSK
Intron Amino Acid Position:
1355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
77.4
0.62
0.9
72.1
38
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
54.1
0.21
1.9
74.41
42.1

Associated Gene:

Gene:
UHRF1BP1L
Ensembl Gene ID:
ENSAPLG00000011479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012025
44310658 - 44364707
54050