Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44405781_44407337_R

Intron Information:

Intron Rank:

130940

Intron Class:

major

Intron Phase:

Intron Coordinates:

44405781 - 44407337

Intron Length:

1557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

CGTCTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

CATAGCTAAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.9

33.7

Major BPS

61.3

0.28

30.6

Major PPT

76.7

0.6

0.8

69.7

Minor 5ss

31.4

-2.1

2.7

33.6

35.4

Minor BPS

46.4

-0.2

2.1

56.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021977

44405122 - 44408279

3158