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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44429591_44433113_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44429591 - 44433113
Intron Length:
3523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTCCAATCAATT
Flanking Amino Acid:
ALHHAALNGHKDIVLKLLQY
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
79.2
0.72
1
75
40
Major PPT
83.9
0.76
0.8
75.9
38
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
47
-0.1
1.9
68.25
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011425
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011901
44429508 - 44466616
37109