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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44445024_44452068_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44445024 - 44452068
Intron Length:
7045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAT
Flanking Amino Acid:
LEAGMDVSCQTEKGSALHEA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
67.3
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
30.1
-2.3
3
33.3
35.5
Minor BPS
64.9
0.55
1.4
78.42
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011425
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011901
44429508 - 44466616
37109