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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44455355_44463393_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44455355 - 44463393
Intron Length:
8039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTGTCTTTAAAT
Flanking Amino Acid:
QSLQIAALLQEYMETGNASV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.7
0.62
0.9
70.2
38.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
72.6
0.79
1.4
81.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011425
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011901
44429508 - 44466616
37109