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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44463505_44466380_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44463505 - 44466380
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CTGTTTTTAAAG
Flanking Amino Acid:
PEVPPSPKAKSEAVTGELSK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.8
31.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
76.9
0.61
1
77.9
34.4
Minor 5ss
37.1
-1.5
2.8
43.5
37.7
Minor BPS
58.9
0.14
1.5
59.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011425
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011901
44429508 - 44466616
37109