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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44836089_44838876_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44836089 - 44838876
Intron Length:
2788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTTAACTAACT
Flanking Amino Acid:
MLVSSGGYLKWWNVTTGESL
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
52.2
0.15
2.1
79.27
42.1

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152