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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44839024_44839459_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44839024 - 44839459
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
GTATACATAACC
Flanking Amino Acid:
ATGDDKGDIRIWDILTGGLL
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.2
57.3
47
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
85.5
0.8
0.6
85.3
22
Minor 5ss
35.2
-1.7
3.7
47.5
48
Minor BPS
58.5
0.25
1.8
70.8
39.4

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152