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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44840531_44840794_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44840531 - 44840794
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATGAAAA
Flanking Amino Acid:
LSWSFDGTVKVWNIITGKTE
Intron Amino Acid Position:
1068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78
0.63
0.9
73.2
36.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
50.4
0.01
1.8
66.61
39.3

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152
ENSAPLT00000045062
44835945 - 44867096
31152