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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44843479_44843806_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44843479 - 44843806
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
CTTCATTGTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCATTCTTCATT
Flanking Amino Acid:
AVGQENGTVKVLQLLDGKVL
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.3
33
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
65.8
0.36
1.1
66.4
38.4
Minor 5ss
45.8
-0.4
2.9
64.9
46.4
Minor BPS
55.3
0.25
1.7
68.65
42.8

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010879
44835945 - 44867096
31152
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152