Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44850479_44852606_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44850479 - 44852606

Intron Length:

2128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTATGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TATTTCTTATGC

Flanking Amino Acid:

ATCSNDTFIKLWDLKGKYCR

Intron Amino Acid Position:

724

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

75.2

35.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

82.6

0.73

0.9

78.1

34.7

Minor 5ss

33.8

-1.8

3.2

40.4

Minor BPS

58.3

0.24

1.9

70.87

40.6

Associated Gene:

Gene:

APAF1

Ensembl Gene ID:

ENSAPLG00000010387

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040670

44835945 - 44867096

31152

ENSAPLT00000010879

44835945 - 44867096

31152