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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44855886_44857636_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44855886 - 44857636
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATCTAAAAT
Flanking Amino Acid:
SETGAFYLEWINKKSLKNLS
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.4
0.82
0.8
80.9
30.7
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
53.9
0.2
1.8
73.28
43.5

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152