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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44860923_44861513_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44860923 - 44861513
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTGTCTTAATG
Flanking Amino Acid:
LPKDVKVPTKVLCILWDMET
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.5
0.66
0.8
77.4
36.9
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
66.4
0.38
1.5
66.07
42.7

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152