Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44862959_44863763_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44862959 - 44863763

Intron Length:

805

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATGTCA

5'SS Class:

major

3'SS Sequence:

TCTCTTGTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

TTGATCTGAAAT

Flanking Amino Acid:

LRLLMLRKYPRSLLVLDDIW

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

67.3

33.8

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

75.3

0.57

0.8

68.7

37.2

Minor 5ss

31.6

-2.1

3.2

39.3

Minor BPS

57.5

0.31

1.6

74.81

41.5

Associated Gene:

Gene:

APAF1

Ensembl Gene ID:

ENSAPLG00000010387

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045062

44835945 - 44867096

31152

ENSAPLT00000040670

44835945 - 44867096

31152

ENSAPLT00000010879

44835945 - 44867096

31152