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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44863948_44864949_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44863948 - 44864949
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTA
5'SS Class:
major
3'SS Sequence:
TTGTTCCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATGATTAACA
Flanking Amino Acid:
EALRDHQLLEDYFPGGVHWI
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
75.2
37.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.7
0.62
1
77.7
36.7
Minor 5ss
48.2
-0.2
2.8
67.3
43.8
Minor BPS
50.3
0.01
2
62.27
43.4

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045062
44835945 - 44867096
31152
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152