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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44865148_44866450_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44865148 - 44866450
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
KSSVDGMTSYVKTVLCEGGV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
81.8
31.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.7
0.8
0.8
83.3
31.9
Minor 5ss
36.7
-1.5
3.3
49.9
46.4
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040670
44835945 - 44867096
31152
ENSAPLT00000010879
44835945 - 44867096
31152
ENSAPLT00000045062
44835945 - 44867096
31152