About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44866638_44866924_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44866638 - 44866924
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATCA
5'SS Class:
major
3'SS Sequence:
ATATTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTATAACA
Flanking Amino Acid:
TEEEEKVKQQNTQKERAAML
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
64.7
36.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.4
0.57
0.9
67.7
42.8
Minor 5ss
36.2
-1.6
3.3
48.1
47.6
Minor BPS
61.5
0.36
2
80.03
36.1

Associated Gene:

Gene:
APAF1
Ensembl Gene ID:
ENSAPLG00000010387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010879
44835945 - 44867096
31152