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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44870602_44872210_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44870602 - 44872210
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTGTAATT
Flanking Amino Acid:
ISLAACLVLTWFLFQQSGRF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.7
0.44
1.1
72.7
41.4
Minor 5ss
36.1
-1.6
3.1
47.2
42.9
Minor BPS
59.2
0.37
2
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010351
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010776
44870373 - 44879101
8729