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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44887053_44889697_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44887053 - 44889697
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
GTATTCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTAATTAACT
Flanking Amino Acid:
PLDLVKCRIQVDPQKYKSIF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.6
0.49
1
70.2
41.1
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
63.6
0.5
1.8
81.04
40

Associated Gene:

Gene:
SLC25A3
Ensembl Gene ID:
ENSAPLG00000020761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029493
44884785 - 44893551
8767