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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44889533_44893397_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44889533 - 44893397
Intron Length:
3865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTGTCTTTATTT
Flanking Amino Acid:
RSLAAASAAEDYSCEYGSLK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
85
29.8
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
63.6
0.5
1.6
76.16
41.2

Associated Gene:

Gene:
SLC25A3
Ensembl Gene ID:
ENSAPLG00000020761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034552
44884785 - 44893551
8767