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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44902259_44902809_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44902259 - 44902809
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAATACG
5'SS Class:
major
3'SS Sequence:
TGAATCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAATC
Flanking Amino Acid:
TILTASDETLVGNRVPGNFK
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
64.2
39.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.5
0.3
1.1
58.7
42.7
Minor 5ss
37.3
-1.4
2.8
45
37.7
Minor BPS
52.1
0.05
1.4
56.45
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010502
44899219 - 44920092
20874