About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44902906_44903003_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44902906 - 44903003
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGATGAGA
5'SS Class:
major
3'SS Sequence:
TTTAAACAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTATTCAACT
Flanking Amino Acid:
RVSRRTPRKRVEATAQLPVD
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
58.5
42
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.7
0.29
1.1
56.6
42.4
Minor 5ss
25.8
-2.8
2.9
22.3
37
Minor BPS
69.3
0.69
1.7
89.41
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010502
44899219 - 44920092
20874