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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44907773_44909245_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44907773 - 44909245
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
AAACCACTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATTATTAAAA
Flanking Amino Acid:
DSDQYSDNEEDPKTELRLEK
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
64.6
0.33
1
55.1
39.3
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
53.6
0.11
1.7
62.62
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010502
44899219 - 44920092
20874