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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44911166_44919849_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44911166 - 44919849
Intron Length:
8684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACTGGAAAC
Flanking Amino Acid:
RGRGAAAAGRKATKKTDKPR
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
88.4
0.86
0.7
84.2
30.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
44.2
-0.4
2.1
58.31
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010502
44899219 - 44920092
20874