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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44932910_44935708_F

Intron Information:

Intron Rank:
131653
Intron Class:
major
Intron Phase:
Intron Coordinates:
44932910 - 44935708
Intron Length:
2799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TATGCATTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
61.1
0.25
1.1
60.1
39.5
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
63.8
0.41
1.9
77.75
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020663
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025512
44932693 - 44970136
37444