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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44935840_44970084_F

Intron Information:

Intron Rank:
131654
Intron Class:
major
Intron Phase:
Intron Coordinates:
44935840 - 44970084
Intron Length:
34245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTATAAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
49
-0
2
67.97
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020663
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025512
44932693 - 44970136
37444