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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45326242_45327141_R

Intron Information:

Intron Rank:
131113
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
45326242 - 45327141
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
AGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTTTAT|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ACATCAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
71.6
0.54
1
72
33.1
Major PPT
42.9
-0.4
3.2
66.7
39.7
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
48.3
-0
2
67.33
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028711
45301737 - 45327413
25677