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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45343751_45344293_R

Intron Information:

Intron Rank:
151241
Intron Class:
major
Intron Phase:
Intron Coordinates:
45343751 - 45344293
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTGGCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.8
0.49
1
65.5
40.2
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
44.5
-0.4
2.4
67
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036426
45342527 - 45350744
8218
ENSAPLT00000020374
45342527 - 45353333
10807