About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45418918_45420061_R

Intron Information:

Intron Rank:
134186
Intron Class:
major
Intron Phase:
Intron Coordinates:
45418918 - 45420061
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
75.3
0.87
1
82.84
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019484
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036454
45418367 - 45463338
44972