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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45420150_45462856_R

Intron Information:

Intron Rank:
134187
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
45420150 - 45462856
Intron Length:
42707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTTA
5'SS Class:
weak_major
3'SS Sequence:
ATTTTATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.6
0.55
1
69.5
40.2
Minor 5ss
60.1
0.34
2.5
73
44
Minor BPS
55.9
0.04
1.9
67.99
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019484
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036454
45418367 - 45463338
44972