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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45500218_45500920_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45500218 - 45500920
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AGCTGCTTATTG
Flanking Amino Acid:
EMIKQFHVQLNEMHALLERY
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
87
0.83
0.6
81.2
30.9
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
46.5
-0.4
2
49.98
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402