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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45503674_45505814_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
45503674 - 45505814
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGATTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATTTTGATT
Flanking Amino Acid:
KQESKETLKQLSKLNSASAE
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.2
0.63
1
77.7
40.6
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
61.3
0.44
1.2
74.35
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402