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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45506039_45506518_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45506039 - 45506518
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATA
5'SS Class:
major
3'SS Sequence:
TTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
ANEDPPGKGDGLDFQSYLSG
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.1
37.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
42.5
-0.8
3
54
45.2
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402